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| H (Match allé) | HNK Orašje | - | NK Travnik | 1:1 (1:0) | ||
| R (match retour) | NK Travnik | - | HNK Orašje | 3:1 (1:1) | ||
| H (Match allé): 18.10.2016 15:00 | R (match retour): 25.10.2016 13:30 | vainqueur: NK Travnik | ||||
| H (Match allé) | FK Mladost Doboj-Kakanj | - | Slavija Sarajevo | 6:1 (5:1) | ||
| R (match retour) | Slavija Sarajevo | - | FK Mladost Doboj-Kakanj | 0:2 (0:0) | ||
| H (Match allé): 19.10.2016 15:00 | R (match retour): 26.10.2016 13:30 | vainqueur: FK Mladost Doboj-Kakanj | ||||
| H (Match allé) | Sloboda Tuzla | - | Široki Brijeg | 1:0 (1:0) | ||
| R (match retour) | Široki Brijeg | - | Sloboda Tuzla | 2:0 (0:0) | ||
| H (Match allé): 19.10.2016 15:00 | R (match retour): 26.10.2016 15:00 | vainqueur: Široki Brijeg | ||||
| H (Match allé) | FK Sarajevo | - | FK Kozara | 3:1 (1:0) | ||
| R (match retour) | FK Kozara | - | FK Sarajevo | 0:5 (0:2) | ||
| H (Match allé): 19.10.2016 15:00 | R (match retour): 26.10.2016 13:30 | vainqueur: FK Sarajevo | ||||
| H (Match allé) | FK Rudar Kakanj | - | Radnik Bijeljina | 0:1 (0:0) | ||
| R (match retour) | Radnik Bijeljina | - | FK Rudar Kakanj | 5:1 (3:1) | ||
| H (Match allé): 19.10.2016 15:00 | R (match retour): 26.10.2016 13:30 | vainqueur: Radnik Bijeljina | ||||
| H (Match allé) | Zrinjski Mostar | - | Velež Mostar | 3:0 (1:0) | ||
| R (match retour) | Velež Mostar | - | Zrinjski Mostar | 1:2 (0:2) | ||
| H (Match allé): 19.10.2016 16:00 | R (match retour): 26.10.2016 13:30 | vainqueur: Zrinjski Mostar | ||||
| H (Match allé) | Željezničar Sarajevo | - | FK Goražde | 5:1 (3:1) | ||
| R (match retour) | FK Goražde | - | Željezničar Sarajevo | 0:3 (0:0) | ||
| H (Match allé): 19.10.2016 19:00 | R (match retour): 26.10.2016 15:00 | vainqueur: Željezničar Sarajevo | ||||
| H (Match allé) | FK Bosna | - | FK Radnički Lukavac | 6:0 (2:0) | ||
| R (match retour) | FK Radnički Lukavac | - | FK Bosna | 3:2 (3:1) | ||
| H (Match allé): 20.10.2016 15:00 | R (match retour): 26.10.2016 13:30 | vainqueur: FK Bosna | ||||
