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| 09.07.2016 | 12:00 | Cerezo Osaka | - | Hokkaido Consadole Sapporo | 0:0 (0:0) | |
| 10.07.2016 | 11:00 | JEF United Chiba | - | Mito HollyHock | 0:1 (0:1) | |
| 11:00 | Kamatamare Sanuki | - | Ehime FC | 1:1 (1:1) | ||
| 11:00 | FC Machida Zelvia | - | Montedio Yamagata | 2:1 (2:0) | ||
| 11:00 | Renofa Yamaguchi | - | Giravanz Kitakyushu | 5:1 (1:0) | ||
| 11:00 | Shimizu S-Pulse | - | Roasso Kumamoto | 4:0 (2:0) | ||
| 11:00 | V-Varen Nagasaki | - | FC Gifu | 2:1 (1:1) | ||
| 11:00 | Tokyo Verdy | - | Fagiano Okayama | 2:1 (1:0) | ||
| 11:00 | Matsumoto Yamaga | - | Zweigen Kanazawa | 4:2 (0:0) | ||
| 11:00 | Yokohama FC | - | Tokushima Vortis | 0:2 (0:0) | ||
| 12:00 | Kyoto Sanga FC | - | Thespakusatsu Gunma | 0:0 (0:0) |
| » Classement | équipe recevante | à l'extérieur | Premier tour | Second tour |
| # | Équipe | M. | G. | N. | P. | Buts | Diff. | Pts. | |
|---|---|---|---|---|---|---|---|---|---|
| 1 |
|
Hokkaido Consadole Sapporo | 22 | 15 | 4 | 3 | 34:15 | 19 | 49 |
| 2 |
|
Matsumoto Yamaga | 22 | 13 | 5 | 4 | 34:18 | 16 | 44 |
| 3 |
|
Cerezo Osaka | 22 | 13 | 5 | 4 | 31:20 | 11 | 44 |
| 4 |
|
Fagiano Okayama | 22 | 11 | 6 | 5 | 34:24 | 10 | 39 |
| 5 |
|
Kyoto Sanga FC | 22 | 10 | 8 | 4 | 29:20 | 9 | 38 |
| 6 |
|
Shimizu S-Pulse | 22 | 10 | 7 | 5 | 41:18 | 23 | 37 |
| 7 |
|
FC Machida Zelvia | 22 | 10 | 6 | 6 | 25:18 | 7 | 36 |
| 8 |
|
Renofa Yamaguchi | 22 | 10 | 4 | 8 | 33:34 | -1 | 34 |
| 9 |
|
Ehime FC | 22 | 7 | 9 | 6 | 18:20 | -2 | 30 |
| 10 |
|
JEF United Chiba | 22 | 7 | 8 | 7 | 28:26 | 2 | 29 |
| 11 |
|
Montedio Yamagata | 22 | 7 | 7 | 8 | 24:24 | 0 | 28 |
| 12 |
|
Yokohama FC | 22 | 7 | 5 | 10 | 23:27 | -4 | 26 |
| 13 |
|
V-Varen Nagasaki | 22 | 5 | 10 | 7 | 25:30 | -5 | 25 |
| 14 |
|
Tokushima Vortis | 22 | 7 | 4 | 11 | 20:25 | -5 | 25 |
| 15 |
|
Mito HollyHock | 22 | 5 | 9 | 8 | 21:22 | -1 | 24 |
| 16 |
|
FC Gifu | 22 | 7 | 3 | 12 | 26:36 | -10 | 24 |
| 17 |
|
Roasso Kumamoto | 22 | 7 | 3 | 12 | 23:35 | -12 | 24 |
| 18 |
|
Kamatamare Sanuki | 22 | 5 | 8 | 9 | 22:28 | -6 | 23 |
| 19 |
|
Tokyo Verdy | 22 | 5 | 8 | 9 | 19:29 | -10 | 23 |
| 20 |
|
Giravanz Kitakyushu | 22 | 5 | 5 | 12 | 20:36 | -16 | 20 |
| 21 |
|
Thespakusatsu Gunma | 22 | 4 | 7 | 11 | 24:34 | -10 | 19 |
| 22 |
|
Zweigen Kanazawa | 22 | 3 | 7 | 12 | 21:36 | -15 | 16 |
| Promotion | |
| Play-off | |
| Relégation | |
| Relégation |
