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| Classement | Premier tour | » Second tour |
| # | Équipe | M. | G. | N. | P. | Buts | Diff. | Pts. | |
|---|---|---|---|---|---|---|---|---|---|
| 1 |
|
Shonan Bellmare | 21 | 11 | 8 | 2 | 37:16 | 21 | 41 |
| 2 |
|
Matsumoto Yamaga | 21 | 11 | 7 | 3 | 32:17 | 15 | 40 |
| 3 |
|
JEF United Chiba | 21 | 10 | 8 | 3 | 29:18 | 11 | 38 |
| 4 |
|
Yokohama FC | 21 | 10 | 5 | 6 | 33:24 | 9 | 35 |
| 5 |
|
Montedio Yamagata | 21 | 10 | 3 | 8 | 31:27 | 4 | 33 |
|
Oita Trinita | 21 | 9 | 6 | 6 | 31:27 | 4 | 33 | |
| 7 |
|
Giravanz Kitakyushu | 21 | 8 | 8 | 5 | 28:27 | 1 | 32 |
| 8 |
|
Kyoto Sanga FC | 21 | 6 | 12 | 3 | 26:22 | 4 | 30 |
| 9 |
|
Roasso Kumamoto | 21 | 8 | 6 | 7 | 24:22 | 2 | 30 |
| 10 |
|
Consadole Sapporo | 21 | 7 | 8 | 6 | 24:23 | 1 | 29 |
| 11 |
|
Fagiano Okayama | 21 | 7 | 7 | 7 | 31:30 | 1 | 28 |
| 12 |
|
Thespakusatsu Gunma | 21 | 7 | 5 | 9 | 25:27 | -2 | 26 |
| 13 |
|
Tokyo Verdy | 21 | 6 | 8 | 7 | 18:21 | -3 | 26 |
| 14 |
|
V-Varen Nagasaki | 21 | 6 | 7 | 8 | 20:20 | 0 | 25 |
| 15 |
|
FC Gifu | 21 | 6 | 6 | 9 | 26:30 | -4 | 24 |
| 16 |
|
Júbilo Iwata | 21 | 5 | 9 | 7 | 30:36 | -6 | 24 |
| 17 |
|
Mito HollyHock | 21 | 5 | 8 | 8 | 23:25 | -2 | 23 |
| 18 |
|
Tochigi SC | 21 | 6 | 5 | 10 | 26:35 | -9 | 23 |
| 19 |
|
Ehime FC | 21 | 5 | 7 | 9 | 30:38 | -8 | 22 |
| 20 |
|
Kamatamare Sanuki | 21 | 5 | 7 | 9 | 20:30 | -10 | 22 |
| 21 |
|
Avispa Fukuoka | 21 | 4 | 6 | 11 | 22:34 | -12 | 18 |
| 22 |
|
Kataller Toyama | 21 | 3 | 6 | 12 | 17:34 | -17 | 15 |
| Promotion | |
| Play-off | |
| Relégation | |
| Relégation |
