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| Classement | Premier tour | » Second tour |
| # | Équipe | M. | G. | N. | P. | Buts | Diff. | Pts. | |
|---|---|---|---|---|---|---|---|---|---|
| 1 |
|
Yokohama FC | 21 | 12 | 5 | 4 | 35:19 | 16 | 41 |
| 2 |
|
Matsumoto Yamaga | 21 | 11 | 7 | 3 | 22:12 | 10 | 40 |
| 3 |
|
Omiya Ardija | 21 | 12 | 3 | 6 | 34:24 | 10 | 39 |
| 4 |
|
Tokyo Verdy | 21 | 11 | 6 | 4 | 28:20 | 8 | 39 |
| 5 |
|
FC Machida Zelvia | 21 | 11 | 6 | 4 | 27:19 | 8 | 39 |
| 6 |
|
Oita Trinita | 21 | 11 | 3 | 7 | 38:23 | 15 | 36 |
| 7 |
|
Avispa Fukuoka | 21 | 9 | 7 | 5 | 29:21 | 8 | 34 |
| 8 |
|
Ehime FC | 21 | 9 | 6 | 6 | 21:24 | -3 | 33 |
| 9 |
|
Mito HollyHock | 21 | 9 | 5 | 7 | 27:20 | 7 | 32 |
| 10 |
|
Tokushima Vortis | 21 | 9 | 4 | 8 | 28:21 | 7 | 31 |
| 11 |
|
Ventforet Kofu | 21 | 9 | 4 | 8 | 23:23 | 0 | 31 |
| 12 |
|
Tochigi SC | 21 | 8 | 6 | 7 | 20:17 | 3 | 30 |
| 13 |
|
Zweigen Kanazawa | 21 | 7 | 7 | 7 | 25:21 | 4 | 28 |
| 14 |
|
JEF United Chiba | 21 | 8 | 3 | 10 | 37:34 | 3 | 27 |
| 15 |
|
Kyoto Sanga FC | 21 | 8 | 3 | 10 | 22:25 | -3 | 27 |
| 16 |
|
Albirex Niigata | 21 | 8 | 3 | 10 | 25:30 | -5 | 27 |
| 17 |
|
Montedio Yamagata | 21 | 5 | 8 | 8 | 21:27 | -6 | 23 |
| 18 |
|
Renofa Yamaguchi | 21 | 5 | 7 | 9 | 26:33 | -7 | 22 |
| 19 |
|
Fagiano Okayama | 21 | 6 | 4 | 11 | 16:24 | -8 | 22 |
| 20 |
|
FC Gifu | 21 | 3 | 4 | 14 | 17:39 | -22 | 13 |
| 21 |
|
Kamatamare Sanuki | 21 | 3 | 4 | 14 | 11:40 | -29 | 13 |
| 22 |
|
Roasso Kumamoto | 21 | 3 | 3 | 15 | 25:41 | -16 | 12 |
| Promotion | |
| Play-off | |
| Play-off | |
| Relégation |
