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| Classement | Premier tour | » Second tour |
| # | Équipe | M. | G. | N. | P. | Buts | Diff. | Pts. | |
|---|---|---|---|---|---|---|---|---|---|
| 1 |
|
Yokohama FC | 21 | 15 | 5 | 1 | 37:14 | 23 | 50 |
| 2 |
|
Kashiwa Reysol | 21 | 15 | 2 | 4 | 63:19 | 44 | 47 |
| 3 |
|
Tokushima Vortis | 21 | 13 | 3 | 5 | 44:24 | 20 | 42 |
| 4 |
|
Omiya Ardija | 21 | 11 | 6 | 4 | 37:23 | 14 | 39 |
| 5 |
|
Ventforet Kofu | 21 | 11 | 5 | 5 | 31:17 | 14 | 38 |
| 6 |
|
Mito HollyHock | 21 | 10 | 4 | 7 | 32:23 | 9 | 34 |
| 7 |
|
Fagiano Okayama | 21 | 10 | 4 | 7 | 23:20 | 3 | 34 |
| 8 |
|
Albirex Niigata | 21 | 9 | 6 | 6 | 40:26 | 14 | 33 |
| 9 |
|
Kyoto Sanga FC | 21 | 9 | 4 | 8 | 29:36 | -7 | 31 |
| 10 |
|
Montedio Yamagata | 21 | 9 | 3 | 9 | 35:27 | 8 | 30 |
| 11 |
|
Zweigen Kanazawa | 21 | 8 | 6 | 7 | 32:30 | 2 | 30 |
| 12 |
|
Tokyo Verdy | 21 | 7 | 6 | 8 | 31:30 | 1 | 27 |
| 13 |
|
Avispa Fukuoka | 21 | 8 | 3 | 10 | 19:27 | -8 | 27 |
| 14 |
|
V-Varen Nagasaki | 21 | 8 | 1 | 12 | 28:36 | -8 | 25 |
| 15 |
|
Tochigi SC | 21 | 5 | 8 | 8 | 18:24 | -6 | 23 |
| 16 |
|
Renofa Yamaguchi | 21 | 6 | 3 | 12 | 20:37 | -17 | 21 |
| 17 |
|
FC Ryūkyū | 21 | 6 | 3 | 12 | 25:50 | -25 | 21 |
| 18 |
|
JEF United Chiba | 21 | 5 | 5 | 11 | 24:33 | -9 | 20 |
| 19 |
|
Kagoshima United | 21 | 5 | 5 | 11 | 21:46 | -25 | 20 |
| 20 |
|
Ehime FC | 21 | 6 | 1 | 14 | 28:38 | -10 | 19 |
| 21 |
|
FC Machida Zelvia | 21 | 3 | 9 | 9 | 16:29 | -13 | 18 |
| 22 |
|
FC Gifu | 21 | 3 | 6 | 12 | 15:39 | -24 | 15 |
| Promotion | |
| Play-off | |
| Relégation |
