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| H (Match allé) | MFK Ružomberok | - | FC Artmedia Petržalka | 1:3 | ||
| R (match retour) | FC Artmedia Petržalka | - | MFK Ružomberok | 1:1 | ||
| H (Match allé): 22.04.2009 16:00 | R (match retour): 05.05.2009 16:00 | vainqueur: FC Artmedia Petržalka | ||||
| H (Match allé) | Slovan Bratislava | - | MFK Košice | 0:1 | ||
| R (match retour) | MFK Košice | - | Slovan Bratislava | 1:1 | ||
| H (Match allé): 22.04.2009 19:00 | R (match retour): 05.05.2009 17:15 | vainqueur: MFK Košice | ||||
