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| Classement | Premier tour | » Second tour |
| # | Équipe | M. | G. | N. | P. | Buts | Diff. | Pts. | |
|---|---|---|---|---|---|---|---|---|---|
| 1 |
|
Gamba Osaka | 21 | 12 | 5 | 4 | 59:30 | 29 | 41 |
| 2 |
|
Tokushima Vortis | 21 | 12 | 5 | 4 | 30:18 | 12 | 41 |
| 3 |
|
Matsumoto Yamaga | 21 | 12 | 4 | 5 | 35:32 | 3 | 40 |
| 4 |
|
Vissel Kobe | 21 | 12 | 3 | 6 | 40:20 | 20 | 39 |
| 5 |
|
Consadole Sapporo | 21 | 11 | 2 | 8 | 36:26 | 10 | 35 |
| 6 |
|
Kyoto Sanga FC | 21 | 10 | 5 | 6 | 32:23 | 9 | 35 |
| 7 |
|
Yokohama FC | 21 | 9 | 5 | 7 | 29:23 | 6 | 32 |
| 8 |
|
JEF United Chiba | 21 | 9 | 4 | 8 | 35:27 | 8 | 31 |
| 9 |
|
V-Varen Nagasaki | 21 | 9 | 3 | 9 | 24:20 | 4 | 30 |
| 10 |
|
Tochigi SC | 21 | 8 | 5 | 8 | 32:33 | -1 | 29 |
| 11 |
|
Giravanz Kitakyushu | 21 | 8 | 5 | 8 | 25:28 | -3 | 29 |
| 12 |
|
Mito HollyHock | 21 | 7 | 7 | 7 | 27:33 | -6 | 28 |
| 13 |
|
Tokyo Verdy | 21 | 8 | 4 | 9 | 27:38 | -11 | 28 |
| 14 |
|
Montedio Yamagata | 21 | 6 | 8 | 7 | 32:33 | -1 | 26 |
| 15 |
|
Fagiano Okayama | 21 | 7 | 5 | 9 | 28:29 | -1 | 26 |
| 16 |
|
Avispa Fukuoka | 21 | 7 | 4 | 10 | 26:35 | -9 | 25 |
| 17 |
|
Kataller Toyama | 21 | 6 | 5 | 10 | 27:30 | -3 | 23 |
| 18 |
|
Ehime FC | 21 | 5 | 8 | 8 | 21:24 | -3 | 23 |
| 19 |
|
Roasso Kumamoto | 21 | 5 | 7 | 9 | 15:32 | -17 | 22 |
| 20 |
|
Thespakusatsu Gunma | 21 | 5 | 6 | 10 | 25:30 | -5 | 21 |
| 21 |
|
FC Gifu | 21 | 5 | 5 | 11 | 21:42 | -21 | 20 |
| 22 |
|
Gainare Tottori | 21 | 1 | 9 | 11 | 20:40 | -20 | 12 |
| Promotion | |
| Play-off | |
| Relégation |
