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| Classement | » Premier tour | Second tour |
| # | Équipe | M. | G. | N. | P. | Buts | Diff. | Pts. | |
|---|---|---|---|---|---|---|---|---|---|
| 1 |
|
Omiya Ardija | 21 | 14 | 4 | 3 | 33:11 | 22 | 46 |
| 2 |
|
Júbilo Iwata | 21 | 12 | 4 | 5 | 34:22 | 12 | 40 |
| 3 |
|
Zweigen Kanazawa | 21 | 10 | 7 | 4 | 28:16 | 12 | 37 |
| 4 |
|
JEF United Chiba | 21 | 10 | 6 | 5 | 31:20 | 11 | 36 |
| 5 |
|
Cerezo Osaka | 21 | 9 | 7 | 5 | 32:19 | 13 | 34 |
| 6 |
|
Consadole Sapporo | 21 | 8 | 10 | 3 | 24:16 | 8 | 34 |
| 7 |
|
Avispa Fukuoka | 21 | 9 | 6 | 6 | 24:23 | 1 | 33 |
| 8 |
|
Tokyo Verdy | 21 | 8 | 7 | 6 | 23:21 | 2 | 31 |
| 9 |
|
Yokohama FC | 21 | 8 | 7 | 6 | 22:27 | -5 | 31 |
| 10 |
|
V-Varen Nagasaki | 21 | 8 | 6 | 7 | 23:17 | 6 | 30 |
| 11 |
|
Ehime FC | 21 | 9 | 3 | 9 | 23:24 | -1 | 30 |
| 12 |
|
Fagiano Okayama | 21 | 7 | 8 | 6 | 22:16 | 6 | 29 |
| 13 |
|
Giravanz Kitakyushu | 21 | 9 | 2 | 10 | 27:30 | -3 | 29 |
| 14 |
|
Kamatamare Sanuki | 21 | 6 | 7 | 8 | 14:17 | -3 | 25 |
| 15 |
|
Thespakusatsu Gunma | 21 | 7 | 4 | 10 | 19:29 | -10 | 25 |
| 16 |
|
Tochigi SC | 21 | 5 | 7 | 9 | 22:29 | -7 | 22 |
| 17 |
|
Kyoto Sanga FC | 21 | 6 | 4 | 11 | 25:33 | -8 | 22 |
| 18 |
|
Mito HollyHock | 21 | 5 | 5 | 11 | 17:24 | -7 | 20 |
| 19 |
|
Tokushima Vortis | 21 | 3 | 10 | 8 | 17:25 | -8 | 19 |
| 20 |
|
Roasso Kumamoto | 21 | 4 | 7 | 10 | 16:29 | -13 | 19 |
| 21 |
|
FC Gifu | 21 | 5 | 4 | 12 | 23:42 | -19 | 19 |
| 22 |
|
Oita Trinita | 21 | 2 | 9 | 10 | 18:27 | -9 | 15 |
| Promotion | |
| Play-off | |
| Relégation | |
| Relégation |
