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| 06.02.1999 | SD Compostela | - | CP Mérida | 0:0 | ||
| UD Las Palmas | - | CD Toledo | 0:0 | |||
| Atlético Madrid B | - | FC Barcelona B | 2:0 | |||
| 07.02.1999 | UE Lleida | - | CD Badajoz | 0:0 | ||
| Rayo Vallecano | - | Hércules CF | 3:0 | |||
| CD Logroñés | - | CA Osasuna | 0:0 | |||
| CD Numancia | - | CD Leganés | 1:1 | |||
| Sevilla FC | - | Recreativo Huelva | 1:0 | |||
| Sporting Gijón | - | SD Eibar | 3:1 | |||
| Málaga CF | - | CD Ourense | 1:1 | |||
| RCD Mallorca B | - | Albacete | 0:0 |
| » Classement | équipe recevante | à l'extérieur | Premier tour | Second tour |
| # | Équipe | M. | G. | N. | P. | Buts | Diff. | Pts. | |
|---|---|---|---|---|---|---|---|---|---|
| 1 |
|
Rayo Vallecano | 23 | 11 | 9 | 3 | 36:29 | 7 | 42 |
| 2 |
|
CD Numancia | 23 | 12 | 5 | 6 | 40:21 | 19 | 41 |
| 3 |
|
Málaga CF | 23 | 11 | 8 | 4 | 35:25 | 10 | 41 |
| 4 |
|
UD Las Palmas | 23 | 10 | 9 | 4 | 34:19 | 15 | 39 |
| 5 |
|
CA Osasuna | 23 | 10 | 9 | 4 | 30:17 | 13 | 39 |
| 6 |
|
CD Toledo | 23 | 10 | 7 | 6 | 30:27 | 3 | 37 |
| 7 |
|
Sevilla FC | 23 | 10 | 6 | 7 | 29:27 | 2 | 36 |
| 8 |
|
Atlético Madrid B | 23 | 9 | 8 | 6 | 37:29 | 8 | 35 |
| 9 |
|
CP Mérida | 23 | 9 | 7 | 7 | 25:18 | 7 | 34 |
| 10 |
|
SD Compostela | 23 | 8 | 9 | 6 | 30:23 | 7 | 33 |
| 11 |
|
UE Lleida | 23 | 8 | 9 | 6 | 25:21 | 4 | 33 |
| 12 |
|
Recreativo Huelva | 23 | 9 | 6 | 8 | 20:17 | 3 | 33 |
| 13 |
|
CD Logroñés | 23 | 8 | 8 | 7 | 31:32 | -1 | 32 |
| 14 |
|
RCD Mallorca B | 23 | 9 | 4 | 10 | 28:31 | -3 | 31 |
| 15 |
|
CD Badajoz | 23 | 7 | 7 | 9 | 19:19 | 0 | 28 |
| 16 |
|
Albacete | 23 | 7 | 7 | 9 | 17:21 | -4 | 28 |
| 17 |
|
CD Leganés | 23 | 6 | 8 | 9 | 21:28 | -7 | 26 |
| 18 |
|
Sporting Gijón | 23 | 6 | 7 | 10 | 22:29 | -7 | 25 |
| 19 |
|
Hércules CF | 23 | 6 | 4 | 13 | 21:38 | -17 | 22 |
| 20 |
|
SD Eibar | 23 | 5 | 4 | 14 | 16:34 | -18 | 19 |
| 21 |
|
CD Ourense | 23 | 4 | 4 | 15 | 20:43 | -23 | 16 |
| 22 |
|
FC Barcelona B | 23 | 3 | 5 | 15 | 23:41 | -18 | 14 |
