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| 08.06.2013 | 06:00 | Tochigi SC | - | Avispa Fukuoka | 2:0 (1:0) | |
| 07:00 | Montedio Yamagata | - | Tokushima Vortis | 2:2 (1:0) | ||
| 07:00 | Tokyo Verdy | - | Mito HollyHock | 0:0 (0:0) | ||
| 07:00 | Kataller Toyama | - | Thespakusatsu Gunma | 0:0 (0:0) | ||
| 07:00 | Ehime FC | - | Consadole Sapporo | 3:2 (2:1) | ||
| 10:00 | Yokohama FC | - | Gainare Tottori | 2:1 (1:0) | ||
| 10:00 | Matsumoto Yamaga | - | Fagiano Okayama | 1:0 (0:0) | ||
| 10:00 | Vissel Kobe | - | JEF United Chiba | 2:2 (1:0) | ||
| 11:00 | Giravanz Kitakyushu | - | Gamba Osaka | 0:1 (0:1) | ||
| 12:00 | FC Gifu | - | V-Varen Nagasaki | 2:1 (0:1) | ||
| 09.06.2013 | 12:00 | Roasso Kumamoto | - | Kyoto Sanga FC | 1:3 (0:0) |
| » Classement | équipe recevante | à l'extérieur | Premier tour | Second tour |
| # | Équipe | M. | G. | N. | P. | Buts | Diff. | Pts. | |
|---|---|---|---|---|---|---|---|---|---|
| 1 |
|
Gamba Osaka | 18 | 11 | 6 | 1 | 35:15 | 20 | 39 |
| 2 |
|
Vissel Kobe | 18 | 11 | 4 | 3 | 32:18 | 14 | 37 |
| 3 |
|
V-Varen Nagasaki | 18 | 9 | 5 | 4 | 22:17 | 5 | 32 |
| 4 |
|
Kyoto Sanga FC | 18 | 9 | 4 | 5 | 30:19 | 11 | 31 |
| 5 |
|
Tochigi SC | 18 | 9 | 4 | 5 | 22:15 | 7 | 31 |
| 6 |
|
JEF United Chiba | 18 | 7 | 7 | 4 | 28:19 | 9 | 28 |
| 7 |
|
Tokyo Verdy | 18 | 6 | 9 | 3 | 20:13 | 7 | 27 |
| 8 |
|
Fagiano Okayama | 18 | 6 | 9 | 3 | 22:17 | 5 | 27 |
| 9 |
|
Montedio Yamagata | 18 | 8 | 2 | 8 | 33:24 | 9 | 26 |
| 10 |
|
Matsumoto Yamaga | 18 | 7 | 5 | 6 | 18:15 | 3 | 26 |
| 11 |
|
Avispa Fukuoka | 18 | 7 | 5 | 6 | 18:18 | 0 | 26 |
| 12 |
|
Mito HollyHock | 18 | 6 | 6 | 6 | 21:20 | 1 | 24 |
| 13 |
|
Consadole Sapporo | 18 | 7 | 2 | 9 | 19:21 | -2 | 23 |
| 14 |
|
Tokushima Vortis | 18 | 7 | 2 | 9 | 23:29 | -6 | 23 |
| 15 |
|
Ehime FC | 18 | 6 | 3 | 9 | 20:22 | -2 | 21 |
| 16 |
|
Roasso Kumamoto | 18 | 5 | 6 | 7 | 22:26 | -4 | 21 |
| 17 |
|
Kataller Toyama | 18 | 5 | 5 | 8 | 17:26 | -9 | 20 |
| 18 |
|
Yokohama FC | 18 | 4 | 7 | 7 | 16:21 | -5 | 19 |
| 19 |
|
Gainare Tottori | 18 | 4 | 7 | 7 | 13:26 | -13 | 19 |
| 20 |
|
Giravanz Kitakyushu | 18 | 3 | 5 | 10 | 14:27 | -13 | 14 |
| 21 |
|
Thespakusatsu Gunma | 18 | 2 | 6 | 10 | 11:27 | -16 | 12 |
| 22 |
|
FC Gifu | 18 | 2 | 5 | 11 | 9:30 | -21 | 11 |
| Promotion | |
| Play-off | |
| Relégation |
